IB Biology · Theme D · D1.2

From code
to protein.

From three-letter codon to folded protein. The central dogma, decoded.

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SL+HLLevel
MoleculesLevel of organisation
D1.2
Why this topic

What this topic answers.

Every sub-topic below feeds at least one of these questions.

Topic focus

Protein Synthesis.

D1.2.1 / D1.2.2 · Transcription

From DNA to mRNA.

In the nucleus, RNA polymerase reads a DNA template and assembles a complementary mRNA molecule that can leave the nucleus.

  1. RNA polymerase binds the DNA at the start of a gene; unwinds a short stretch (~12 bp).
  2. One DNA strand serves as the template strand; the other (the sense or coding strand) has the same sequence as the eventual mRNA (with T → U).
  3. RNA polymerase moves along the template strand in the 3' → 5' direction, producing mRNA in the 5' → 3' direction.
  4. Base pairing: A ↔ U, T ↔ A, G ↔ C.
  5. Once finished, mRNA detaches; DNA rewinds into the double helix.

In eukaryotes, transcription happens in the nucleus. The mRNA must then leave through nuclear pores to reach the ribosomes in the cytoplasm.

D1.2.3 / D1.2.4 · Translation

From mRNA to polypeptide.

Ribosomes read the mRNA in triplets (codons), with tRNA delivering the correct amino acid for each. The polypeptide grows from the N-terminus toward the C-terminus.

The players

The sequence

  1. Initiation. Small ribosomal subunit binds the mRNA at the start codon (AUG). The first tRNA (carrying methionine) binds at the P site. Large subunit joins.
  2. Elongation. A new tRNA enters the A site, anticodon matching the next codon. A peptide bond forms between the amino acid at P and the one at A. The ribosome moves one codon along; the now-empty tRNA exits via the E site.
  3. Termination. A stop codon (UAA, UAG, or UGA) is reached. No tRNA matches; release factors trigger polypeptide release. Ribosomal subunits dissociate.
D1.2.5 / D1.2.6 · Codons

The genetic code, read in triplets.

Three bases code for one amino acid. 4³ = 64 possible codons → 20 amino acids + start/stop signals. Code is degenerate (multiple codons per amino acid) and near-universal.

D1.2.7 · Reading frame

Where you start matters.

Codons are read sequentially with no gaps. The starting point determines the reading frame — and shifting by one or two bases produces a completely different polypeptide.

The ribosome reads three bases at a time, moving 3 bases per step. Once translation begins at the start codon, the reading frame is locked. Insertions or deletions of bases (other than multiples of three) shift the reading frame — almost always producing a non-functional protein. This is why frameshift mutations are usually catastrophic.

Vocabulary

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