IB Biology · Theme C · C1.3

Sunlight
into
sugar.

A planet powered by sunlight. The chemistry that turned an inert atmosphere into a biosphere.

19Sub-topics
45Key terms
SL+HLLevel
MoleculesLevel of organisation
C1.3
Why this topic

What this topic answers.

Every sub-topic below feeds at least one of these questions.

Guiding question 1

How is energy from sunlight absorbed and used in photosynthesis?

Guiding question 2

How do abiotic factors interact with photosynthesis?

C1.3.1 – C1.3.8 · Standard Level

8 things to lock in.

The required syllabus content for C1.3, in order. Each card is one lesson-sized checkpoint.

C1.3.1

Transformation of light energy to chemical energy when carbon compounds are produced in photosynthesis

This energy transformation supplies most of the chemical energy needed for life processes in ecosystems.

C1.3.2

Conversion of carbon dioxide to glucose in photosynthesis using hydrogen obtained by splitting water

Conversion of carbon dioxide to glucose in photosynthesis using hydrogen obtained by splitting water

C1.3.3

Oxygen as a by-product of photosynthesis in plants, algae and cyanobacteria

Oxygen as a by-product of photosynthesis in plants, algae and cyanobacteria

C1.3.4

Separation and identification of photosynthetic pigments by chromatography

Separation and identification of photosynthetic pigments by chromatography

C1.3.5

Absorption of specific wavelengths of light by photosynthetic pigments

Absorption of specific wavelengths of light by photosynthetic pigments

C1.3.6

Similarities and differences of absorption and action spectra

Similarities and differences of absorption and action spectra

C1.3.7

Techniques for varying concentrations of carbon dioxide, light intensity or temperature experimentally to investigate the effects of limiting factors on the rate of photosynthesis

C.1.3.8: Carbon dioxide enrichment experiments as a means of predicting future rates of photosynthesis and plant growth

C1.3.8

Carbon dioxide enrichment experiments as a means of predicting future rates of photosynthesis and plant growth

Carbon dioxide enrichment experiments as a means of predicting future rates of photosynthesis and plant growth

C1.3.1 / C1.3.2 · Photosynthesis basics

Sunlight into sugar.

Photosynthesis transforms light energy into the chemical energy of organic compounds. It supplies most of the chemical energy in every ecosystem on Earth.

📐

Word equation

carbon dioxide + water → glucose + oxygen

The hydrogen in glucose comes from water (not CO₂). Oxygen is a by-product, released to the atmosphere.

The glucose produced becomes the starting point for every other organic molecule in the plant — and (indirectly, through food webs) in almost every other organism in the ecosystem.

C1.3.3 · Oxygen as by-product

The greatest pollution event in Earth's history.

Cyanobacteria, algae and plants all do photosynthesis. All three split water — and all three release oxygen as a waste product.

The oxygen in Earth's atmosphere is biological in origin. Before photosynthesis evolved (in cyanobacteria ~2.5 Ga), the atmosphere contained essentially no O₂. The slow build-up of photosynthetic oxygen — the "Great Oxygenation Event" — fundamentally restructured the biosphere.

C1.3.4 · Chromatography of pigments

Separating colours with a solvent.

Plant leaves contain multiple pigments. Chromatography separates them based on their polarity and solubility.

Pigments in a leaf extract are spotted onto chromatography paper or a TLC plate, then a solvent is drawn up through the medium. Each pigment travels a different distance depending on its solubility in the solvent. Distinct coloured bands separate out.

📏

Calculating Rf values

Rf = (distance travelled by pigment) ÷ (distance travelled by solvent front). Each pigment has a characteristic Rf value, allowing identification.

Pigments you should know: chlorophyll a (blue-green), chlorophyll b (yellow-green), carotene (orange-red), xanthophyll (yellow).

C1.3.5 / C1.3.6 · Absorption & action spectra

Which wavelengths drive photosynthesis.

Pigments absorb specific wavelengths of light. The wavelengths absorbed (absorption spectrum) closely match the wavelengths that drive photosynthesis (action spectrum).

Absorption spectrum

For one pigment

Measured with a spectrophotometer. Shows percentage of incident light absorbed at each wavelength. Chlorophyll absorbs strongly in red (~660 nm) and blue (~430 nm); reflects green (which is why leaves look green).

Action spectrum

For the whole plant

Measured by tracking rate of photosynthesis (O₂ released or CO₂ consumed) at each wavelength. Peaks roughly match absorption peaks. Green light produces more photosynthesis than chlorophyll absorbs alone — because accessory pigments absorb where chlorophyll doesn't.

C1.3.7 · Limiting factors

Three abiotic factors cap photosynthesis.

Light intensity, CO₂ concentration, and temperature can all be the limiting factor. Whichever is in shortest supply sets the rate.

Light intensity

Increases rate until plateau

Vary by changing distance from light source. As light increases, rate of photosynthesis increases — then plateaus when another factor becomes limiting.

CO₂ concentration

Increases rate until plateau

Vary by changing concentration of NaHCO₃ in solution around aquatic plants. CO₂ is often the most limiting factor in greenhouses — adding more dramatically boosts growth.

Temperature

Bell curve

Faster reactions until enzymes denature at high T. Each species has an optimum temperature for photosynthesis.

C1.3.8 · CO₂ enrichment experiments

What happens to plants as CO₂ rises?

As atmospheric CO₂ rises, scientists need to predict effects on plants. Two scales of experiment, with different trade-offs.

Greenhouse

Controlled, small scale

Plants grown in enclosed greenhouses with elevated CO₂. Easy to control variables; can isolate the effect of CO₂. But: artificial environment.

FACE

Field-scale, real ecosystem

Free-Air Carbon Dioxide Enrichment — plots of natural vegetation with elevated CO₂ piped over them. Captures the real ecosystem response (with insects, soil, weather). But: harder to control variables.

🧪

Nature of Science · field vs lab

Field experiments are messier but more ecologically realistic. Lab experiments isolate variables better but may miss interactions. Both are needed — and scientists must identify dependent, independent, and controlled variables in either setting.

HL extension

Higher Level only.

An extra 11 sub-topics for HL — same syllabus, deeper mechanism.

HL only

Photosystems as arrays of pigment molecules that can generate and emit excited electrons

Photosystems as arrays of pigment molecules that can generate and emit excited electrons

HL only

Advantages of the structured array of different types of pigment molecules in a photosystem

Advantages of the structured array of different types of pigment molecules in a photosystem

HL only

Generation of oxygen by the photolysis of water in photosystem II

Generation of oxygen by the photolysis of water in photosystem II

HL only

ATP production by chemiosmosis in thylakoids

ATP production by chemiosmosis in thylakoids

HL only

Reduction of NADP by photosystem I

Reduction of NADP by photosystem I

HL only

Thylakoids as systems for performing the light-dependent reactions of photosynthesis

Thylakoids as systems for performing the light-dependent reactions of photosynthesis

HL only

Carbon fixation by Rubisco

Carbon fixation by Rubisco

HL only

Synthesis of triose phosphate using reduced NADP and ATP

Synthesis of triose phosphate using reduced NADP and ATP

HL only

Regeneration of RuBP in the Calvin cycle using ATP

Regeneration of RuBP in the Calvin cycle using ATP

HL only

Synthesis of carbohydrates, amino acids and other carbon compounds using the products of the Calvin cycle and mineral nutrients

Synthesis of carbohydrates, amino acids and other carbon compounds using the products of the Calvin cycle and mineral nutrients

HL only

Interdependence of the light-dependent and light-independent reactions

Interdependence of the light-dependent and light-independent reactions

C1.3.9 / C1.3.10 · Photosystems

Pigment arrays.

A photosystem is an array of chlorophyll and accessory pigments centred on a special reaction-centre chlorophyll. Light absorbed anywhere in the array funnels excitation energy to the centre.

A single chlorophyll molecule couldn't power photosynthesis. The array of many pigments — including accessory pigments that capture different wavelengths — collects light from a much broader spectrum, then funnels the energy to the reaction centre. There, an excited electron is emitted and enters the electron transport chain.

Photosynthesis uses two photosystems in series — PSII and PSI — both embedded in the thylakoid membrane.

C1.3.11 · Photolysis

Where the oxygen comes from.

Photosystem II uses light energy to split water. Protons and electrons enter photosynthesis; oxygen is released as waste.

  1. Photoactivation of PSII. Light energy excites electrons in PSII chlorophyll; excited electrons leave PSII.
  2. Photolysis. PSII pulls electrons from water to replace what it lost. Water is split → H⁺, electrons, and ½ O₂.
  3. Oxygen released as waste from the chloroplast and ultimately the plant.
  4. H⁺ contributes to the proton gradient in the thylakoid space; electrons feed the chain to PSI.
🌍

The biggest atmospheric event in history

Before photosynthesis evolved (~2.5 Ga), Earth's atmosphere had no O₂. Cyanobacterial photolysis slowly oxygenated the oceans (creating banded iron formations as Fe²⁺ precipitated to Fe³⁺), then the atmosphere. Ozone (O₃) formed in the stratosphere, blocking UV. The whole subsequent evolution of life ran on this transformation.

C1.3.12–14 · ATP production & NADP reduction

Chemiosmosis in thylakoids.

The light reactions create a proton gradient across the thylakoid membrane. Protons flow back through ATP synthase, making ATP — just like in mitochondria.

Non-cyclic photophosphorylation

  • PSII absorbs light → excited electrons leave PSII.
  • Electrons travel through electron transport chain (in thylakoid membrane) to PSI.
  • Energy released pumps H⁺ into the thylakoid space.
  • PSI absorbs light → excited electrons leave PSI.
  • Electrons + H⁺ reduce NADP⁺ → NADPH (in stroma).
  • Photolysis of water replaces electrons lost from PSII (and adds H⁺ to thylakoid space + releases O₂).
  • Accumulated H⁺ in thylakoid space flows back into stroma through ATP synthase → ATP made.

Cyclic photophosphorylation

When NADP⁺ is in short supply: PSI's electrons cycle back to PSI through the electron transport chain. Generates the proton gradient → ATP only. No NADPH, no O₂.

C1.3.15–17 · Calvin cycle

Fixing carbon, in the stroma.

In the stroma, ATP and NADPH from the light reactions are used to fix CO₂ into organic compounds. Three named steps; Rubisco is the headline enzyme.

  1. Carbon fixation. CO₂ + RuBP (5C) → unstable 6C compound → 2 × glycerate 3-phosphate (3C, "GP"). Catalysed by Rubisco — the most abundant enzyme on Earth.
  2. Reduction. GP + ATP + NADPH → triose phosphate (3C, "TP") + ADP + NADP⁺. The reducing power and energy come from the light reactions.
  3. Regeneration. Most TP is recycled back to RuBP, using ATP. For every 6 turns of the cycle: 12 TP made → 10 recycled to 6 RuBP, 2 used to make 1 glucose.

Rubisco is slow and inefficient at low CO₂ — which is why plants need so much of it (it's ~30% of soluble leaf protein in C3 plants).

C1.3.18 · Other carbon compounds

From triose phosphate to everything else.

The triose phosphate produced by the Calvin cycle is the starting point for every other carbon compound a plant makes.

From triose phosphate (or various other Calvin-cycle intermediates), plants synthesise:

  • Glucose, sucrose — for respiration and transport.
  • Starch — for energy storage.
  • Cellulose — for cell walls.
  • Amino acids (combined with N from soil nitrate) → proteins.
  • Fatty acids and glycerollipids.
  • Nucleotidesnucleic acids.
C1.3.19 · Interdependence

Each set of reactions needs the other.

The light-dependent and light-independent reactions are mutually dependent. Cut one off and the other stops.

Light → Dark

Light reactions feed the Calvin cycle

The Calvin cycle uses ATP and NADPH made by the light reactions. Stop the light reactions → no ATP, no NADPH → Calvin cycle stops.

Dark → Light

Calvin cycle feeds the light reactions

The Calvin cycle regenerates NADP⁺ when NADPH is oxidised. If CO₂ runs out, NADP⁺ isn't regenerated, PSI has nowhere to send its electrons, and the light reactions stop.

HL-only key terms

Light Dependent ReactionsLight Independent ReactionsCalvin CycleElectron Transport ChainChemiosmosisPhotosystemsPhotoactivationPhotolysisChloroplastChlorophyllStromaThylakoid MembraneThylakoid SpacePhosphorylationCyclic PhotophosphorylationNon-Cyclic PhotophosphorylationOxidationReductionNADP+NADPHATP SynthaseCarbon FixationRubiscoRuBPGlycerate 3-phosphateTriose PhosphatePhotosynthesisPhotosynthesis includes:Electron Transport ChainsThe Calvin Cycle
Vocabulary

15 terms to own.

If you can't define one of these in a sentence, that's where to revise next.

PhotosynthesisEcosystemPhotolysisChromatographyPigmentsChlorophyllAccessory PigmentsRf ValuesAbsorption SpectrumAction SpectrumFree-Air Carbon Dioxide Enrichment Experiments (FACE)Field ExperimentIndependent VariableDependent VariableControl Variable

IB Linking Questions

“What are the consequences of photosynthesis for ecosystems?”

“What are the functions of pigments in living organisms?”