IB Biology · Theme C · C1.2

Where ATP
comes from.

How cells get usable energy out of food. Glycolysis, the Krebs cycle, the electron transport chain — the slowest possible burn.

17Sub-topics
48Key terms
SL+HLLevel
MoleculesLevel of organisation
C1.2
Why this topic

What this topic answers.

Every sub-topic below feeds at least one of these questions.

Guiding question 1

What are the roles of hydrogen and oxygen in the release of energy in cells?

Guiding question 2

How is energy distributed and used inside cells?

C1.2.1 – C1.2.6 · Standard Level

6 things to lock in.

The required syllabus content for C1.2, in order. Each card is one lesson-sized checkpoint.

C1.2.1

ATP as the molecule that distributes energy within cells

ATP as the molecule that distributes energy within cells

C1.2.2

Life processes within cells that ATP supplies with energy

Life processes within cells that ATP supplies with energy

C1.2.3

Energy transfers during interconversions between ATP and ADP

Energy transfers during interconversions between ATP and ADP

C1.2.4

Cell respiration as a system for producing ATP within the cell using energy released from carbon compounds

Cell respiration as a system for producing ATP within the cell using energy released from carbon compounds

C1.2.5

Differences between anaerobic and aerobic cell respiration in humans

Differences between anaerobic and aerobic cell respiration in humans

C1.2.6

Variables affecting the rate of cell respiration

Variables affecting the rate of cell respiration

C1.2.1 / C1.2.2 · ATP

The cell's energy currency.

ATP is a small, transportable, recyclable energy carrier. Almost every reaction in the cell that needs energy uses ATP hydrolysis as its source.

ATP — adenosine triphosphate — is a nucleotide: adenine + ribose + three phosphate groups. The bond between the last two phosphates is unstable. Hydrolysing it releases energy. The energy is exactly the right magnitude to power most cellular tasks.

Use 1

Active transport

Pumps moving ions and molecules against gradients (Na⁺/K⁺ pump, sodium-glucose cotransport indirectly).

Use 2

Anabolism

Building macromolecules from monomers (protein synthesis, glycogen formation, DNA replication).

Use 3

Movement

Muscle contraction; chromosome movement during mitosis; transport of vesicles by motor proteins.

C1.2.3 · ATP ⇌ ADP cycle

Hydrolyse, then re-build.

ATP is continuously consumed and remade. Hydrolysis releases energy; respiration provides the energy to rebuild ATP from ADP + phosphate.

ATP + H₂O → ADP + Pi + energy   (hydrolysis, used by the cell)
ADP + Pi + energy → ATP + H₂O   (condensation, powered by respiration)

An average human cell uses and regenerates ~10 million ATP molecules per second. Cells don't store much ATP — they constantly recycle it.

C1.2.4 · Cell respiration

Releasing ATP from food.

Cell respiration is the controlled release of ATP energy from organic substrates — usually glucose, sometimes fatty acids or amino acids.

🫁

Don't confuse respiration with breathing

Cell respiration = chemical reactions inside cells that release energy from food.
Gas exchange (breathing/ventilation) = movement of O₂ in and CO₂ out at lungs and at cells. They are coupled but distinct.

C1.2.5 · Aerobic vs anaerobic respiration

Two pathways, very different yields.

Both start with glucose. With oxygen, the cell extracts most of its energy. Without oxygen, only the first stage runs — and the yield is tiny.

FeatureAerobicAnaerobic (in humans)
OxygenRequiredNot used
ATP yield (per glucose)~36 (net)2 (net)
Waste productsCO₂ + H₂OLactate
Location in cellMostly mitochondriaCytoplasm only
Word equationglucose + O₂ → CO₂ + H₂Oglucose → lactate
C1.2.6 · Measuring respiration

What to measure, and how.

Rate of respiration is usually measured as O₂ consumed or CO₂ produced per unit time. Respirometers are the classic apparatus.

Methods: respirometer (with KOH to absorb CO₂, isolating O₂ change); oxygen or CO₂ probes; volume of gas produced.

Factors to investigate: temperature, mass of organisms, pH (for yeast), substrate type/concentration, enzyme inhibitors (HL).

Rate = gradient of the volume-vs-time graph. Initial rate (just after t=0) is most accurate.

HL extension

Higher Level only.

An extra 11 sub-topics for HL — same syllabus, deeper mechanism.

HL only

Role of NAD as a carrier of hydrogen and oxidation by removal of hydrogen during cell respiration

Role of NAD as a carrier of hydrogen and oxidation by removal of hydrogen during cell respiration

HL only

Conversion of glucose to pyruvate by stepwise reactions in glycolysis with a net yield of ATP and reduced NAD

Conversion of glucose to pyruvate by stepwise reactions in glycolysis with a net yield of ATP and reduced NAD

HL only

Conversion of pyruvate to lactate as a means of regenerating NAD in anaerobic cell respiration

Conversion of pyruvate to lactate as a means of regenerating NAD in anaerobic cell respiration

HL only

Anaerobic cell respiration in yeast and its use in brewing and baking

Anaerobic cell respiration in yeast and its use in brewing and baking

HL only

Oxidation and decarboxylation of pyruvate as a link reaction in aerobic cell respiration

Oxidation and decarboxylation of pyruvate as a link reaction in aerobic cell respiration

HL only

Oxidation and decarboxylation of acetyl groups in the Krebs cycle with a yield of ATP and reduced NAD

Oxidation and decarboxylation of acetyl groups in the Krebs cycle with a yield of ATP and reduced NAD

HL only

Transfer of energy by reduced NAD to the electron transport chain in the mitochondrion

Transfer of energy by reduced NAD to the electron transport chain in the mitochondrion

HL only

Generation of a proton gradient by flow of electrons along the electron transport chain

Generation of a proton gradient by flow of electrons along the electron transport chain

HL only

Chemiosmosis and the synthesis of ATP in the mitochondrion

Chemiosmosis and the synthesis of ATP in the mitochondrion

HL only

Role of oxygen as terminal electron acceptor in aerobic cell respiration

Role of oxygen as terminal electron acceptor in aerobic cell respiration

HL only

Differences between lipids and carbohydrates as respiratory substrates

Differences between lipids and carbohydrates as respiratory substrates

C1.2.7 · NAD and redox

The electron shuttle.

NAD is an electron carrier. It picks up electrons (and hydrogen) from oxidised substrates and delivers them to the electron transport chain.

Oxidation = loss of electrons (or H). Reduction = gain of electrons (or H). Always paired in redox reactions — what one loses, the other gains.

When NAD accepts an electron pair and an H from a substrate, the substrate is oxidised and NAD becomes reduced NAD. Reduced NAD then carries those electrons to the inner mitochondrial membrane, where it donates them to the electron transport chain (regenerating NAD).

C1.2.8 · Glycolysis

Glucose → 2 pyruvate.

10 enzyme-catalysed steps in the cytoplasm. Doesn't need oxygen. Net yield: 2 ATP, 2 reduced NAD.

  1. Phosphorylation. Two ATP molecules phosphorylate glucose, forming an unstable 6-carbon hexose bisphosphate. (Initial investment of 2 ATP.)
  2. Lysis. The 6-carbon compound splits into two 3-carbon triose phosphates.
  3. Oxidation. Each triose phosphate is oxidised — NAD is reduced to reduced NAD (×2).
  4. ATP formation. As each 3-carbon compound is processed to pyruvate, 2 ATP are produced. Total: 4 ATP made. Net: 4 − 2 invested = 2 ATP.
C1.2.9 · Lactate fermentation

Regenerating NAD without oxygen.

Glycolysis needs a constant supply of NAD. Without oxygen, the electron transport chain can't regenerate it — so the cell uses pyruvate.

In humans, when O₂ is short (intense exercise), pyruvate is reduced to lactate. The reduced NAD from glycolysis is oxidised back to NAD in the process — keeping glycolysis running.

Net result: 2 ATP per glucose (the gain from glycolysis), lactate as waste. The body deals with lactate later — converted back to pyruvate or glucose in the liver, using oxygen ("oxygen debt").

C1.2.10 · Yeast and fermentation

Beer, bread, CO₂.

Yeast also performs anaerobic respiration — but with different products. Used in brewing (ethanol) and baking (CO₂).

In yeast, pyruvate is converted to ethanol + CO₂. NAD is regenerated, glycolysis continues, and the cell gets 2 ATP per glucose. Two industrially useful products:

  • Brewing — ethanol is the product wanted; CO₂ escapes (or is captured for fizzy drinks).
  • Baking — CO₂ is the product wanted; ethanol evaporates during baking. The CO₂ makes bread rise.
C1.2.11 · The link reaction

Pyruvate → acetyl-CoA.

The bridge between glycolysis and the Krebs cycle. Pyruvate enters the mitochondrial matrix, loses CO₂, gives electrons to NAD, and joins coenzyme A.

  1. Pyruvate enters the mitochondrion.
  2. Decarboxylation — loses CO₂, becoming a 2-carbon acetyl group.
  3. Oxidation — loses electrons + H to NAD; NAD is reduced.
  4. Combination — acetyl group attaches to coenzyme A → acetyl-CoA, which delivers the acetyl to the Krebs cycle.

Fatty acids also feed in here — broken down into acetyl groups that join CoA, bypassing glycolysis. Lipid stores can fuel respiration via the same Krebs cycle.

C1.2.12 · The Krebs cycle

Cyclic harvest of electrons.

A cyclic series of reactions in the mitochondrial matrix. Each turn finishes oxidation of one acetyl group, producing CO₂, 3 reduced NAD, 1 reduced FAD, and 1 ATP.

  1. Acetyl-CoA delivers acetyl (2C) to oxaloacetate (4C) → citrate (6C).
  2. Citrate undergoes two decarboxylations (loses 2 CO₂) and four oxidations as it's converted back to oxaloacetate.
  3. The four oxidations are dehydrogenation reactions: H + electrons are transferred. Three transfers to NAD → 3 reduced NAD; one to FAD → 1 reduced FAD.
  4. One ATP is produced directly per cycle (substrate-level phosphorylation).
  5. Oxaloacetate is regenerated; cycle repeats.

One glucose → 2 pyruvate → 2 turns of the Krebs cycle. Total from Krebs per glucose: 4 CO₂, 6 reduced NAD, 2 reduced FAD, 2 ATP.

C1.2.13–16 · The electron transport chain & chemiosmosis

Where most of the ATP actually comes from.

Reduced NAD and reduced FAD from glycolysis, link reaction and Krebs cycle deliver their electrons here. Energy is harvested to pump protons; protons flowing back power ATP synthase.

The electron transport chain

  • Reduced NAD donates electrons to the first protein complex on the inner mitochondrial membrane.
  • Electrons are passed along a chain of carriers via redox reactions.
  • Energy released as electrons move pumps H⁺ from the matrix into the intermembrane space.
  • Result: a proton gradient across the inner membrane (high H⁺ in intermembrane space, low in matrix).

Chemiosmosis & ATP synthase

The inner membrane is impermeable to H⁺ except through ATP synthase. Protons flow down their gradient through this enzyme, driving its rotor. The mechanical energy is used to synthesise ATP from ADP + Pi. This coupling — proton flow to ATP synthesis — is called chemiosmosis.

Oxygen as terminal electron acceptor

At the end of the electron transport chain, oxygen accepts the electrons and combines with H⁺ from the matrix to form water. Without oxygen the chain backs up; reduced NAD can't be re-oxidised; the chain stops; ATP synthesis stops. This is why aerobic respiration absolutely requires oxygen.

C1.2.17 · Lipids vs carbohydrates

Lipids store more energy.

Per gram, lipids yield about twice the ATP of carbohydrates. Their long hydrocarbon chains contain many C–H bonds whose electrons can be harvested.

Fatty acids are broken down into acetyl groups (β-oxidation) that feed into the Krebs cycle. Because each long fatty acid produces many acetyl groups, each lipid molecule yields far more ATP than a single glucose. Plus lipids are hydrophobic — stored compactly without affecting cellular water balance.

HL-only key terms

Redox ReactionsOxidationReductionElectron CarriersGlycolysisPhosphorylationLysisPyruvateLactateNADReduced NADAerobic RespirationAnaerobic RespirationThe Link ReactionDecarboxylationCoenzyme AKrebs CycleOxaloacetateCitrateDehydrogenation ReactionsMitochondrionInner Mitochondrial MembraneCristaeMatrixProtons (H+)Proton GradientATP SynthaseChemiosmosisCellular RespirationAerobic Respiration includes:Electron Transport Chain
Vocabulary

17 terms to own.

If you can't define one of these in a sentence, that's where to revise next.

Adenosine Triphosphate (ATP)Adenosine Diphosphate (ADP)NucleotideMetabolismAnabolismMacromoleculesActive TransportHydrolysis ReactionCondensation ReactionRespirationAerobic RespirationAnaerobic RespirationLactateGas ExchangeRespirometerEnzymeSubstrate

IB Linking Questions

“In what forms is energy stored in living organisms?”

“What are the consequences of respiration for ecosystems?”

“What are examples of structure–function relationships in biological macromolecules?”