IB Biology · Theme B · B2.1

The membrane.
A boundary,
but never closed.

A two-molecule-thick layer of fat keeps the inside in. How membranes work — and how cells get past them.

16Sub-topics
56Key terms
SL+HLLevel
CellsLevel of organisation
B2.1
Why this topic

What this topic answers.

Every sub-topic below feeds at least one of these questions.

Guiding question 1

How do molecules of lipid and protein assemble into biological membranes?

Guiding question 2

What determines whether a substance can pass through a biological membrane?

B2.1.1 – B2.1.9 · Standard Level

9 things to lock in.

The required syllabus content for B2.1, in order. Each card is one lesson-sized checkpoint.

B2.1.1

Lipid bilayers as the basis of cell membranes

Phospholipids and other amphipathic lipids naturally form continuous sheet-like bilayers in water.

B2.1.2

Lipid bilayers as barriers

Lipid bilayers as barriers

B2.1.3

Simple diffusion across membranes

Simple diffusion across membranes

B2.1.4

Integral and peripheral proteins in membranes

Integral and peripheral proteins in membranes

B2.1.5

Movement of water molecules across membranes by osmosis and the role of aquaporins

Movement of water molecules across membranes by osmosis and the role of aquaporins

B2.1.7

Pump proteins for active transport

Pump proteins for active transport

B2.1.8

Selectivity in membrane permeability

Selectivity in membrane permeability

B2.1.9

Structure and function of glycoproteins and glycolipids

Structure and function of glycoproteins and glycolipids

B2.1.10

Fluid mosaic model of membrane structure

Fluid mosaic model of membrane structure

B2.1.1 · The lipid bilayer

Two molecules thick. Every cell, every membrane.

Phospholipids spontaneously form bilayers in water. The same self-assembly underlies every cellular membrane on Earth.

A phospholipid is amphipathic: hydrophilic phosphate head, two hydrophobic fatty acid tails. Drop them in water and the molecules self-arrange — heads outward in contact with water, tails inward huddled together. The result is a bilayer about 5 nm thick.

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Drawing convention

Phosphate head = circle. Two fatty acid tails = two lines extending from it. Bilayer = two rows of phospholipids facing each other tail-to-tail. Tails meet in the middle.

B2.1.2 · Bilayers as barriers

Most molecules can't get through.

The hydrophobic core of the bilayer is impermeable to large molecules and hydrophilic particles — which makes the membrane a selective barrier.

The fatty acid tails in the middle of the bilayer are hydrophobic. They don't dissolve charged ions or large polar molecules. So only small, uncharged, hydrophobic particles can pass directly through the bilayer:

This selective barrier is what allows cells to maintain internal conditions different from their environment — to do chemistry at all.

B2.1.3 · Simple diffusion

Passive, down the gradient.

For molecules that can cross the bilayer, movement happens passively — kinetic energy drives them from high to low concentration.

Kinetic theory: particles are always in motion, moving in random directions. Where there are more particles, more move outward than inward (statistically). Net movement: high → low concentration. No cellular energy required — hence "passive".

Canonical examples:

B2.1.4 · Integral & peripheral proteins

Membrane proteins, two flavours.

Membrane proteins do most of the membrane's specific work — transport, signalling, recognition, anchoring. Two categories based on how they're attached.

Integral

Embedded in the bilayer

Permanently part of the membrane. Have a hydrophobic central region (matching the fatty acid tails) and hydrophilic regions at the surfaces. Often transmembrane — spanning the entire bilayer. Examples: channel proteins, pumps, transmembrane glycoproteins.

Peripheral

Attached to a surface

Temporarily attached to one side of the membrane by electrostatic interactions (with phosphate heads or integral protein surfaces). Don't penetrate the bilayer. Hydrophilic on all sides. Examples: receptor proteins, enzymes.

B2.1.5 · Osmosis & aquaporins

Water moves down its own gradient.

Osmosis is the passive movement of water across a semipermeable membrane from a region of low solute concentration to high. Water gets where the solutes can't.

Water is small and (barely) polar — it can cross the bilayer directly, but very slowly. Solutes can't cross the bilayer. So if solute concentrations differ on the two sides, water (but not solute) redistributes — diluting the high-solute side and concentrating the low-solute side. Net movement: low solute → high solute.

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Aquaporins

Direct osmosis through the bilayer is too slow for many tissues' needs. Aquaporins are integral channel proteins that allow water — and only water — to pass through rapidly. Osmosis through aquaporins is a form of facilitated diffusion. Essential in kidney tubules, plant root cells, red blood cells.

B2.1.6 · Facilitated diffusion through channels

A pore made just for me.

Charged or polar particles cross membranes via channel proteins — each protein specific for a particular ion or molecule. Selectively permeable membrane achieved.

A channel protein is a transmembrane protein with a central pore. The pore is lined with hydrophilic R-groups, suited to letting specific charged particles pass through. Channels are passive — they don't add energy — but they are selective.

Many channels are gated: they open and close in response to a signal. Voltage-gated sodium and potassium channels respond to changes in membrane potential and drive nerve impulses (covered in detail in C2.2).

B2.1.7 · Active transport via protein pumps

Uphill movement costs ATP.

Cells often need to move substances against their concentration gradient. That requires a protein pump and ATP energy. Five-step mechanism.

  1. A specific particle binds to a binding site on the pump.
  2. ATP binds to the pump and is hydrolysed — phosphate stays attached.
  3. The attached phosphate causes the pump to change shape.
  4. The shape change moves the particle across the membrane and releases it on the other side — against the concentration gradient.
  5. Phosphate detaches; pump returns to its original shape; the cycle can repeat.
B2.1.8 · Selective permeability

Membranes choose what gets through.

Three transport modes, three levels of selectivity.

Simple diffusion

Not selective

Anything small and hydrophobic enough to cross the bilayer can. No protein involvement, no specificity.

Facilitated diffusion

Selective

Channel/carrier proteins are specific to particular ions/molecules. Only what fits the channel can pass.

Active transport

Selective + uphill

Each pump moves a specific substance, and uses ATP to drive movement against the gradient.

B2.1.9 · Glycoproteins & glycolipids

Carbohydrate name tags.

Membrane proteins and phospholipids with attached carbohydrate chains face the cell exterior. The carbohydrates serve as recognition signals — for hormones, neurotransmitters, the immune system, and neighbouring cells.

Glycoproteins = protein + carbohydrate chain. Glycolipids = phospholipid + carbohydrate chain. Both have the carbohydrate facing the extracellular side. Together they form the glycocalyx — the cell's outer carbohydrate coat.

B2.1.10 · The fluid mosaic model

A two-dimensional fluid with proteins floating in it.

Singer and Nicolson (1972). The current model of membrane structure: a fluid phospholipid bilayer with proteins distributed throughout like a mosaic of tiles.

You should be able to draw a 2D fluid mosaic membrane showing:

HL extension

Higher Level only.

An extra 7 sub-topics for HL — same syllabus, deeper mechanism.

HL only

Channel proteins for facilitated diffusion

Channel proteins for facilitated diffusion

HL only

Relationships between fatty acid composition of lipid bilayers and their fluidity

Relationships between fatty acid composition of lipid bilayers and their fluidity

HL only

Cholesterol and membrane fluidity in animal cells

Cholesterol and membrane fluidity in animal cells

HL only

Gated ion channels in neurons

Gated ion channels in neurons

HL only

Sodium–potassium pumps as an example of exchange transporters

Sodium–potassium pumps as an example of exchange transporters

HL only

Sodium-dependent glucose cotransporters as an example of indirect active transport

Sodium-dependent glucose cotransporters as an example of indirect active transport

HL only

Sodium-dependent glucose cotransporters as an example of indirect active transport

Sodium-dependent glucose cotransporters as an example of indirect active transport

B2.1.11 · Fluidity & fatty acid composition

Saturated stiff, unsaturated fluid.

The kinds of fatty acids in a membrane's phospholipids control how fluid the membrane is. Different fluidity is needed at different temperatures.

Saturated

Straight chains pack tight

No C=C double bonds → straight fatty acid tails. Phospholipids pack closely together. Higher melting point — membrane is more stable at high temperatures, less fluid at low temperatures.

Unsaturated

Kinked chains pack loose

One or more C=C bonds create kinks. Phospholipids can't pack as tightly. Lower melting point — membrane stays fluid even at low temperatures.

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Example · Steelhead trout

In steelhead trout, as ambient temperature drops, the proportion of unsaturated fatty acids in membrane phospholipids increases. This keeps the membranes fluid at low temperatures (preventing crystallisation). At higher temperatures, more saturated fatty acids increase membrane stability.

B2.1.12 · Cholesterol

The fluidity buffer in animal membranes.

Cholesterol sits between the fatty acid tails of phospholipids. It modulates membrane fluidity in both directions — stabilising at high temperatures, preventing stiffening at low.

Cholesterol is amphipathic in a small way: most of the molecule is hydrophobic (sits between fatty acid tails), but the single –OH group on cholesterol is hydrophilic (hydrogen-bonds with the phosphate head of a phospholipid).

  • At higher temperatures — cholesterol reduces phospholipid mobility, lowering fluidity, stabilising the membrane.
  • At lower temperatures — cholesterol prevents phospholipids from packing too tightly, maintaining fluidity, preventing crystallisation.
B2.1.13 · Gated ion channels

Channels with switches.

Gated ion channels open and close in response to specific signals. The IB names two types in neurons: voltage-gated and ligand-gated.

Voltage-gated

Respond to membrane potential

Open or close in response to changes in the potential difference (voltage) across the membrane. Sodium and potassium voltage-gated channels drive action potentials along neurons. Calcium voltage-gated channels trigger neurotransmitter release at synapses.

Ligand-gated

Respond to a binding molecule

Open when a specific ligand (molecule) binds to the channel. Nicotinic acetylcholine receptor at the neuromuscular junction: acetylcholine binds → sodium channel opens → Na⁺ flows into the postsynaptic membrane → depolarisation → action potential.

B2.1.14 · Sodium-potassium pump

The resting potential machine.

The Na⁺/K⁺ pump is the classic exchange transporter: it moves Na⁺ out and K⁺ in, against both gradients, using ATP. Without it, no neuron could fire.

  1. 3 Na⁺ ions bind to the pump's sodium binding sites (open inward).
  2. ATP binds and is hydrolysed; phosphate stays attached to the pump.
  3. The attached phosphate triggers a shape change — Na⁺ ions are now exposed to the outside and released.
  4. 2 K⁺ ions bind the pump's potassium binding sites (now open outward).
  5. Phosphate is released; pump returns to original shape — K⁺ ions are released to the inside.

Net effect per cycle: 3 Na⁺ out, 2 K⁺ in. One ATP consumed. Maintains the unequal distribution of ions across the neuronal membrane — the basis of the resting potential (~−70 mV).

B2.1.15 · Sodium-glucose cotransport

Indirect active transport.

Cotransporters couple the downhill movement of one substance to the uphill movement of another. The Na⁺/glucose cotransporter is the IB-named example.

In epithelial cells of the small intestine and nephron, glucose is moved against its concentration gradient — but without directly using ATP. Instead:

  1. The Na⁺/K⁺ pump actively pumps Na⁺ out of the epithelial cell, lowering its internal Na⁺ concentration. (This step consumes ATP.)
  2. Na⁺ now flows back in passively — but only through a specific cotransporter protein.
  3. The cotransporter only transports Na⁺ if it simultaneously transports glucose in the same direction.
  4. So glucose is dragged into the cell against its own gradient, "powered" by the Na⁺ gradient (which was itself created by ATP).

Hence indirect active transport — ATP is consumed somewhere else (making the Na⁺ gradient), not directly by the glucose pump.

B2.1.16 · Cell adhesion

How cells stick together to form tissues.

Cell adhesion molecules (CAMs) and an extracellular matrix join cells into tissues. Different junction types serve different mechanical and communication needs.

Tight junctions

Seal between cells

Form a watertight seal between adjacent cells, preventing leakage between them. Critical in intestinal epithelium and the blood-brain barrier.

Gap junctions

Direct channels

Channels connecting the cytoplasm of adjacent cells. Small molecules and ions pass directly. Important for fast cell-cell communication (e.g. cardiac muscle synchronisation).

Adherens junctions

Mechanical adhesion

Protein complexes physically tether adjacent cells together, providing mechanical adhesion.

Desmosomes

Strong anchor points

Especially strong protein-complex junctions providing structural integrity. Critical in tissues subject to stretch — skin, heart muscle.

HL-only key terms

Saturated Fatty AcidsUnsaturated Fatty AcidsCholesterolSteroidVesiclesBulk TransportExocytosisEndocytosisGated Ion ChannelsVoltage Gated Ion ChannelsLigand Gated Ion ChannelsLigandAcetylcholinePotential Difference (Voltage)Sodium Potassium PumpExchange TransporterResting PotentialAxonCotransportersEpithelial CellsCell Adhesion MoleculesTissuesCell JunctionsTight JunctionsGap JunctionsAdherens JunctionsDesmosomes
Vocabulary

29 terms to own.

If you can't define one of these in a sentence, that's where to revise next.

Lipid BilayerPhospholipidsPolarNonpolarHydrophobicHydrophilicAmphipathicKinetic TheorySimple DiffusionFacilitated DiffusionConcentration GradientOsmosisPassive TransportIntegral ProteinsTransmembrane proteinsPeripheral ProteinsChannel ProteinsProtein PumpsAquaporinsSolutionSoluteSolventSolute ConcentrationSemipermeable membraneActive TransportAdenosine Triphosphate (ATP)GlycoproteinsLipoproteinsFluid Mosaic Model

IB Linking Questions

“What processes depend on active transport in biological systems?”

“What are the roles of cell membranes in the interaction of a cell with its environment?”