IB Biology · Theme A · A2.2

Cells, viewed
as architecture.

Every cell ever observed fits a small set of plans. Inside that plan: organelles, membranes, surface area, and division of labour.

14Sub-topics
56Key terms
SL+HLLevel
CellsLevel of organisation
Why this topic

What this topic answers.

Every sub-topic below feeds at least one of these questions.

Guiding question 1

What are the features common to all cells and the features that differ?

Guiding question 2

How is microscopy used to investigate cell structure?

A2.2.1 – A2.2.11 · Standard Level

11 things to lock in.

The required syllabus content for A2.2, in order. Each card is one lesson-sized checkpoint.

A2.2.1

Cells as the basic structural unit of all living organisms

Nature of Science: Students should be aware that deductive reason can be used to generate predictions from theories.

A2.2.2

Microscopy skills

Nature of Science: Students should appreciate that measurement using instruments is a form of quantitative observation.

A2.2.3

Developments in microscopy

Developments in microscopy

A2.2.4

Structures common to cells in all living organisms

Structures common to cells in all living organisms

A2.2.5

Prokaryote cell structure

Prokaryote cell structure

A2.2.6

Eukaryote cell structure

Eukaryote cell structure

A2.2.7

Processes of life in unicellular organisms

Processes of life in unicellular organisms

A2.2.8

Differences in eukaryotic cell structure between animals, fungi and plants

Differences in eukaryotic cell structure between animals, fungi and plants

A2.2.9

Atypical cell structure in eukaryotes

Atypical cell structure in eukaryotes

A2.2.10

Cell types and cell structures viewed in light and electron micrographs

Cell types and cell structures viewed in light and electron micrographs

A2.2.11

Drawing and annotation based on electron micrographs

Drawing and annotation based on electron micrographs

A2.2.1 · Basic structural unit

Every living thing — made of cells.

The three-part cell theory is biology's oldest big idea, and still its most universal.

Claim 1

The basic unit

Cells are the basic units of structure and function in all living organisms.

Claim 2

The universal claim

All living organisms are composed of one or more cells. The cell is the universal unit.

Claim 3

The biogenetic law

All cells come from pre-existing cells — never from non-living matter (today). Spontaneous generation was disproved by Pasteur in 1861.

🧠

Nature of Science · deductive reasoning

From the general (all known organisms are made of cells), we deduce the specific (any newly discovered organism will be made of cells). Cell theory is a hypothesis-generator, not just a description.

A2.2.2 · Microscopy skills

Magnification, measured.

A microscope by itself doesn't tell you how big anything is. To extract size from a micrograph you need the magnification formula, a scale bar, and clean unit conversions.

1 millimetre
1000 µm

Or 1,000,000 nm. The full conversion chain.

1 micrometre
1000 nm

Or 10⁻⁶ m. Typical eukaryotic cells: 10–100 µm.

1 nanometre
10⁻⁹ m

The scale of large molecules. Hydrogen bond ~3 nm; ribosome ~25 nm.

Magnification formula
M = I÷A

Image size ÷ actual size. Units must match.

Practical skills you need

📐

Worked example

A scale bar on a micrograph measures 20 mm with a ruler, and the caption says it represents 0.4 µm. Convert: 20 mm = 20,000 µm. Magnification = 20,000 ÷ 0.4 = ×50,000. Now any other length on the micrograph can be converted: measured length × (1 / magnification) = real length.

A2.2.3 · Developments in microscopy

From light, to electrons, to fluorescence.

Four key techniques the IB names. Each opened up a new scale or a new kind of question.

Electron microscopy

Resolution down to 0.1 nm

Uses a beam of electrons (much shorter wavelength than light → much better resolution). Reveals organelle structure, viruses, individual proteins. But: samples must be dead, dried, and coated; can't image live cells.

Cryogenic EM (Cryo-EM)

Nobel 2017

Samples flash-frozen in vitreous (non-crystalline) ice, then imaged with electrons. Lets us view proteins and biomolecules in near-native state — and biomolecules that don't crystallise are now imageable at atomic resolution.

Freeze-fracture EM

Splitting membranes open

Sample frozen rapidly, then fractured along lines of weakness — often through the middle of a phospholipid bilayer. Allowed identification of integral membrane proteins; led directly to the Singer–Nicolson fluid mosaic model of membranes.

Immunofluorescence

Lighting up specific molecules

Fluorescent dyes attached to specific antibodies bind to specific proteins. Different colours can label different molecules in the same sample. Works on living tissue → enables studies of dynamic processes like cell division.

A2.2.4 · Common to all cells

The four things every cell has.

Whatever the kingdom, whatever the domain, every cell on Earth shares these four features.

1

Plasma membrane

Phospholipid bilayer enclosing the cell. Controls what enters and leaves.

2

Cytoplasm

Mostly water. The location of most of the cell's chemistry.

3

DNA

The genetic material — circular in prokaryotes, linear and bound to histones in eukaryotes.

4

Ribosomes

The molecular machines that synthesise proteins. 70S in prokaryotes, 80S in eukaryotes.

A2.2.5 · Prokaryote structure

The simpler plan.

Prokaryotes have no membrane-bound organelles and no nucleus. The IB expects you to know Gram-positive eubacteria — Bacillus and Staphylococcus — as standard examples.

Structure Function
Cell wall (peptidoglycan)Provides strength and shape; prevents bursting under osmotic pressure.
Plasma membranePhospholipid bilayer; controls movement of substances into and out of the cell.
CytoplasmSite of most metabolism — including respiration (no mitochondria in prokaryotes).
70S ribosomesSmaller than eukaryote ribosomes; site of protein synthesis.
Nucleoid regionLighter-staining region of cytoplasm containing the single circular chromosome (naked DNA — no histones).
FlagellumLong, rotating appendage used for movement. Bacillus has flagella; Staphylococcus does not.
PilusShorter protein hair. For adhesion to surfaces and for transferring DNA between cells (conjugation).
A2.2.6 · Eukaryote structure

A cell with rooms.

Eukaryotic cells contain membrane-bound organelles, each compartmentalising a different chemistry. The cell becomes a tiny factory with specialised departments.

Organelle Function
NucleusContains chromosomes (DNA + histones). Double membrane (the nuclear envelope) with pores that allow mRNA out.
MitochondrionAerobic respiration → ATP. Double membrane; inner membrane folded into cristae for surface area.
80S ribosomesProtein synthesis. Free in cytoplasm or attached to rough ER.
Rough endoplasmic reticulumMembrane network with ribosomes attached. Synthesises proteins for export and transports them onward.
Smooth endoplasmic reticulumMembrane network without ribosomes. Synthesises lipids; detoxifies drugs and toxins.
Golgi apparatusStack of flattened membrane sacs. Modifies, sorts and packages proteins for secretion.
Vesicles & vacuolesMembrane-bound sacs for transport and storage. Lysosomes are vesicles full of digestive enzymes.
CytoskeletonNetwork of microtubules and microfilaments. Maintains shape, anchors organelles, drives transport and cell division.

Prokaryote vs eukaryote — the comparison

Prokaryote

Bacteria · Archaea · ~1–5 µm
  • DNACircular, naked, in cytoplasm (nucleoid region). Single chromosome plus possibly plasmids.
  • OrganellesNone membrane-bound. 70S ribosomes only.
  • Cell wallPeptidoglycan (bacteria) or pseudopeptidoglycan (archaea).
  • DivisionBinary fission. Fast — ~20 min for E. coli.
VS

Eukaryote

Animals · Plants · Fungi · Protists · ~10–100 µm
  • DNALinear, wrapped around histones, inside a membrane-bound nucleus.
  • OrganellesMany: mitochondria, ER, Golgi, lysosomes, 80S ribosomes; chloroplasts in plants.
  • Cell wallCellulose (plants), chitin (fungi), absent (animals).
  • DivisionMitosis & meiosis (spindle apparatus). Slower, more elaborate.
A2.2.7 · Processes of life

Eight things a cell does to live.

Even a unicellular organism — Paramecium, Amoeba, Chlamydomonas — has to perform all eight functions inside a single cell.

1

Homeostasis

Maintaining stable internal conditions despite a changing environment.

2

Metabolism

The interconnected network of chemical reactions that keep the cell alive.

3

Nutrition

Obtaining and using food. Autotrophs (e.g. plants, cyanobacteria) make their own; heterotrophs (animals, fungi) consume others'.

4

Movement

Changes in position — flagella, cilia, pseudopodia, or muscle contraction in animals.

5

Excretion

Removal of metabolic waste — CO₂, urea, ammonia.

6

Growth

Increase in size or mass over time.

7

Response

Reacting to stimuli, both internal and external — chemotaxis, phototaxis, etc.

8

Reproduction

Producing offspring — asexual (binary fission, mitosis) or sexual (meiosis + fertilisation).

A2.2.8 · Animal, fungal & plant cells

Three eukaryotic variations.

All three are eukaryotic — same general plan. But their differences are syllabus-named and exam-frequent.

Feature Animal Fungal Plant
Cell wallNoneChitinCellulose
VacuolesSmall, scatteredVariableOne large central sap vacuole
PlastidsNoneNoneChloroplasts, chromoplasts, amyloplasts
CentriolesPresentAbsentAbsent
Cilia/flagellaSome cells (sperm, airway)AbsentAbsent (rare in some sperm)
A2.2.9 · Atypical eukaryotic cells

Cells that break the rules.

Most eukaryotic cells have a single nucleus. The IB names four exceptions you should know — and each one's atypia is a clue to its function.

Many nuclei

Aseptate fungal hyphae

Fungal bodies are made of long thread-like hyphae. In some species, hyphae lack septa (internal cell walls) and form one continuous multinucleate "cell" — many nuclei in shared cytoplasm.

Many nuclei

Skeletal muscle fibres

Muscle fibres are formed by fusion of many embryonic precursor cells. The result is one giant cell with many nuclei distributed along its length — better able to coordinate gene expression across a long fibre.

No nucleus

Red blood cells (erythrocytes)

Mammalian RBCs lose their nucleus during maturation. The space gained makes room for more haemoglobin and improves oxygen-carrying capacity. The trade-off: they can't divide and only live ~120 days.

No nucleus

Phloem sieve tube elements

Sieve tube elements lose their nucleus and most organelles at maturity. They become hollow conduits for transport, with companion cells (which keep their nuclei) supporting them.

A2.2.10 & A2.2.11 · Identifying in micrographs & drawing

What to look for, what to draw.

In any micrograph you should be able to identify the cell type (prokaryote, plant, or animal) and a list of structures. In any annotation, name and function are required.

Cell type

Quick triage

Prokaryote: small (1–5 µm), no nucleus, clear nucleoid region. Plant: regular shape, cell wall, often a large central vacuole, possibly chloroplasts. Animal: irregular shape, no cell wall.

Drawing tips

What the IB wants

Drawings in dark pencil; labels in pen. Use a ruler for label lines. Include scale bar where appropriate. For nuclei: double membrane with pores. For mitochondria: smooth outer membrane, folded inner membrane (cristae). For chloroplasts: double membrane plus internal thylakoids.

Structures you must be able to identify in electron micrographs

Nucleoid region (prokaryote) · prokaryotic cell wall · nucleus · mitochondrion · chloroplast · sap vacuole · Golgi apparatus · rough & smooth endoplasmic reticulum · chromosomes · ribosomes · cell wall · plasma membrane · microvilli.

HL extension

Higher Level only.

An extra 3 sub-topics for HL — same syllabus, deeper mechanism.

HL only

Origin of eukaryotic cells by endosymbiosis

Origin of eukaryotic cells by endosymbiosis

HL only

Cell differentiation as the process for developing specialized tissues in multicellular organisms

Cell differentiation as the process for developing specialized tissues in multicellular organisms

HL only

Evolution of multicellularity

Evolution of multicellularity

HL-only key terms

EndosymbiosisScientific theorySymbiosisCell differentiationStem cellsMeristematic tissueGene expressionSpecialized cells
Vocabulary

48 terms to own.

If you can't define one of these in a sentence, that's where to revise next.

CellCell TheoryMicroscopeMagnificationScale barResolutionElectron microscopeDNACytoplasmPlasma membraneNucleoid regionProkaryoteEukaryoteMetabolismRibosomeNucleusChromosomeSister chromatidsHistone proteinOrganelleMitochondrionRough endoplasmic reticulumSmooth endoplasmic reticulumGolgi apparatusVacuoleLysosomeCytoskeletonUnicellularMulticellularHomeostasisNutritionMovementGrowthResponse to stimuliReproductionPlastidsChloroplastsCentriolesFungal hyphaeAseptateCell wallMicrovilliSap vacuoleFlagellumCiliaCellulosePeptidoglycanPilus

IB Linking Questions

“What explains the use of certain molecular building blocks in all living cells?”

“What are the features of a compelling theory?”